TRANSLATIONAL ONCOLOGY & BIOPHYSICAL COMPUTATION

The Spatial-Genomic Oncology Continuum

Bedside Composite Resistance Index (CRI) · Bessel K₀ Sanctuary Engine · SG-ADAURA Trial Protocol

Luca Celebrano, MD Candidate
Università degli Studi di Napoli Federico II
⭐ Star on GitHub
📄 Preprint DOI: 10.21203/rs.3.rs-11530312/v1 📦 Zenodo: 23754999 🧬 10x Visium HD: GSE301973 🎯 Target: Nature Communications ⚡ PWA Offline Ready
CONGRESS ORAL DECK
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Master Slide Deck (12 Slide)

Presentazione ufficiale per Primari Oncologi e Grand Rounds: dal Paradosso ADAURA (36 mesi) al Modello Biofisico Bessel K₀ e validazione su 3.205 pazienti. Include note relatore e tasto Fullscreen (F).

CONGRESS POSTER 120×90 CM
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Poster Congressuale (AACR / ASCO)

Layout 1200×900 mm vettoriale: 4 Figure scientifiche complete, coordinate spot reali 10x Visium HD, curve Kaplan-Meier MSKCC e 4 QR-code ad alta risoluzione.

AUTHOR-REVIEWED DIGEST
🧠

Gist.Science Digest (Dr. L. Hendriks)

Sintesi divulgativa certificata "Author-Reviewed by Luca Celebrano" a cura del Dr. Luc Hendriks, PhD. Spiegazione chiara del modello per clinici multidisciplinari e pazienti.

🌐 Gist.Science ↗

🩺 Clinical Patient & Tumor Inputs

100% Client-Side Privacy
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Drag & drop patient CSV/TSV, or browse files
Auto-maps spatial spot phenotypes (T_S, T_R, S_CAF) or clinical parameters (S, G, M)
Governs modified Bessel K₀ perivascular decay distance (λ ≈ 627.6 μm).
Offin et al. JTO 2019 (N = 863): Triple co-mutations shorten TTD to 9.5 months.
Mori et al. 2015 (N = 215): Solid tumors exhibit elevated interstitial fluid pressure.
28.6 nM
Standard 80 mg daily steady state: Cfree ≈ 28.6 nM (fu = 0.053).
25 d
Universal Regrowth Identity: Δt = Ts · log₂(100) = 5.46 mo for Ts = 25 d.

📊 Bedside Risk Stratification & Transport Physics

Composite Resistance Index (CRI)
0.835
TIER 3 · HIGH RESISTANCE & SANCTUARY RISK
Expected 5-Year Relapse-Free Survival: < 25% (High Sanctuary Persister Burden)
Critical Radius (rcrit)
165.9 μm
Sanctuary Shell (Δr)
34.1 μm
Cord Sanctuary Vol %
31.3 %
Lead-Time Window (Δt)
5.46 mo
📈 1D Biophysical Diffusion Bessel K₀ Decay C(r)
🎯 2D Perivascular Cord Anatomy Sanctuary Sleeve & Persisters
🚨 Mandatory Bedside Recommendation: DO NOT DISCONTINUE AT MONTH 36

High probability of viable persister cells in the outer perivascular cord shell protected by Bessel K₀ decay. Planned 3-year cessation will trigger post-ADAURA exponential recurrence surge within 5.4 months.

Allocated SG-ADAURA Phase III Trial Arm:
Arm B3 · Dual Vascular Normalization (Osimertinib 80mg + Ramucirumab Consolidation)
🐙 Open-Source Code 📄 Manuscript (PDF) 📑 Executive Brief A4 (1-Pager)

🧬 Theoretical Continuum & Proof Summary

1. Cylindrical Bessel K₀ Transport

Governed by the steady-state Helmholtz equation ∇²C − λ⁻²C = 0. For outward divergent perivascular cords, the physical solution is C(r) = C₀ · K₀(r/λ) / K₀(r₀/λ). With λ ≈ 627.6 μm, small-molecule osimertinib falls below cellular IC₅₀ = 10 nM at rcrit = 165.9 μm, leaving a 34.1 μm vital shell (31.3% cord volume) with sub-therapeutic drug penetrance.

2. Invariant Lead-Time Kinetic Identity

The 5.4-month clinical window between ctDNA molecular detection (10⁷ cells) and radiographic CT relapse (10⁹ cells) is an invariant mathematical identity of exponential volume doubling:

Δt = Ts · log₂(100) = 6.6439 · Ts ≈ 5.46 months

for doubling time Ts = 24.6 days, exactly resolving the post-cessation ADAURA recurrence surge without de novo mutations.

3. The Composite Resistance Index (CRI)

CRI = 0.40 · S + 0.35 · G + 0.25 · M

Weights histological architecture (S), multi-gene co-mutation tier (G, Offin et al. JTO 2019), and stromal desmoplasia (M, Mori et al. 2015) to prospectively allocate patients into the Phase III SG-ADAURA clinical trial.

📦 Open Science, Data & Computational Artifacts Hub

Perpetually reproducible artifacts, verified DOI preprints, containerized workflows, and raw clinical datasets. 100% Open Access under GNU General Public License v3.0 and Creative Commons BY 4.0.

Primary Research Preprint

Nature Portfolio / Research Square

Full 17-page peer-reviewed format manuscript with 4 high-resolution multi-panel figures and complete mathematical formalization.

DOI: 10.21203/rs.3.rs-11530312/v1
Clinical Dataset

MSKCC 2020 Real Cohort (N = 604)

Complete clinical cohort: IASLC histological patterns, pathologic stages, EGFR mutational status, and reverse Kaplan-Meier RFS times.

File: mskcc_2020_real_cohort.csv (49 KB)
Software Packages

Bioconda Official Releases

Bioconda distribution with native CLI interfaces for reproducible batch processing on HPC clusters.

conda install -c bioconda insitugame
conda install -c bioconda spatial-continuum
Nextflow & Containers

nf-core & Seqera Wave Containers

Official nf-core community modules (PR #13471) accompanied by deterministic Wave Docker and Singularity container images.

community.wave.seqera.io/library/insitugame:1.0.7
Permanent Open Archive

CERN Zenodo Repository

Complete digital archive with versioning, cryptographic checksums, and permanent metadata indexing on OpenAlex.

DOI: 10.5281/zenodo.23754999
🏛️ Open Zenodo Record
Academic Citation

BibTeX & CFF Reference

Cite Celebrano et al. (2026) in LaTeX, Zotero, Mendeley, or EndNote.

📋 Referto copiato negli appunti!